Implementation Log

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2026-05-26

MkDocs documentation site built

mkdocs.yml — Material theme, teal/cyan palette, dark mode toggle, sticky tabs, code copy

All data_matrices/ paths renamed to data/

All reference data files moved from ./data_matrices/ to ./data/.

Added raw RNAseq preprocessing pipeline

To collect more KilliFish data

2026-03-20

Refactored the KillifishAtlas aging clock pipeline for use in the AA lab.